Bioinformatics, Genetics and Computational Biology

NCBI's comprehensive, international collection of protein sequences

EMBL-EBI's comprehensive, international collection of protein sequences. Composed of two sections: Swiss-Prot and TrEMBL.

Focused on Human Proteins.

Protein Sequences and Annotation

Non-redundant set of patent protein sequences from the European, Japanese, Korean, and US Patent Offices.

Structural protein motifs at family & superfamily level.

Phylogenetic classification of proteins encoded in complete genomes

Nuclear receptor family of ligand-activated transcription factors

Protein families represented as multiple seq alignments or HMMs (Pfam website now serves as a static page with no data updates. Pfam data and new releases are available through InterPro)

Database of protein domains, families and functional sites

Provides functional analysis of proteins by classifying them into families and predicting domains and important sites. (Pfam data and new releases available through InterPro)

Identification and annotation of genetically mobile domains and the analysis of domain architectures

Database of protein post-translational modifications.

Protein posttranslational modifications including phosphorylation, ubiquitination, acetylation and methylation

Protein Amino- and Carboxy- Termini and protease processing

Binding affinities of proteins with small drug-like molecules.

Protein-Protein Docking Program

Provides links to the PSORT family of programs for subcellular localization prediction as well as other datasets and resources relevant to localization prediction.

Functional Site Prediction

Occurrence of HomoRepeats and Patterns in Eukaryotic and Bacterial Proteomes

Protein sequence analysis and classification

A tool for identification of short linear signatures in protein termini

Data on amino acids and their mutations.

Proteomics data including protein and peptide identifications, post-translational modifications and supporting spectral evidence.