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Bioinformatics, Genetics and Computational Biology
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Bioinformatics, Genetics and Computational Biology
Databases and resources focused on molecular biology, genetics, genomes, and related biological data.
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Proteins
Nucleic Acids
Genes
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Genetic Variation
Gene Expression
Clinical Genetics
Structures
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Small Molecules
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Organism-Specific Resources
Biosystems
e-Journals
eBooks
Training
Associations
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Other Resources
Pairwise Sequence Similarity Searching
BLAST (NCBI)
Needleman-Wunsch Global Align Nucleotide Sequences (NCBI)
FASTA (EBI)
JAligner: An open source Java implementation of the Smith-Waterman algorithm with Gotoh's improvement
BLAT (BLAST-like Alignment Tool) - UCSC
Multiple Sequence Alignments
T Coffee
COBALT (NCBI)
ClustalW2 (EBI)
General purpose DNA or protein multiple sequence alignment program for three or more sequences. Will be discontinued in August 2015.
Clustal Omega (EMBL-EBI)
New multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences.
Structure Similarity Searching
VAST: Vector Alignment Search Tool - NCBI
Search SBU's Software Catalog
SBU DoIT Software Catalog
A wide range of software available at SBU SINC sites or through the SBU Virtual SINC.
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