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Pairwise Sequence Similarity Searching
Multiple Sequence Alignments
General purpose DNA or protein multiple sequence alignment program for three or more sequences. Will be discontinued in August 2015.
Clustal Omega (EMBL-EBI)
New multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences.
Structure Similarity Searching
Search SBU's Software Catalog