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Stony Brook University

Data Cleaning and Wrangling Guide

Essential techniques and best practices for preparing ready-to-use data, with implementation examples in Google Sheets, Microsoft Excel, Python, and R.

1. Start with a Clear Plan

Spend some time outlining your goals and determining the precise problems you need to fix in your dataset before you start data cleaning or wrangling. By doing this, you can maintain your concentration and make sure you don't miss any important tasks.

  • Create a Checklist: Make a checklist of common issues to look for, including missing values, duplicates, inconsistent formats, and outliers.
  • Prioritize Tasks: Identify the most critical issues in your dataset that could impact your analysis, and address them first.

2. Document Your Process

Documenting each step of your data cleaning and wrangling process is essential, especially when working on complex datasets or in collaboration with others. Not only this helps you keep track of what you have done, but also it makes it easier to reproduce your work or explain it to others later on.

  • Use Comments: In Excel and Google Sheets, you can add notes to cells or use the "Comments" built-in feature. In Python and R, add comments to your code to explain what each section does.
  • Maintain a Log: Keep a log of all changes you make to your dataset, along with any assumptions or decisions you made along the way.

3. Validate Your Data Regularly

Regular validation throughout the data cleaning and wrangling process is crucial for maintaining data integrity. This step ensures that your modifications have the desired effect and have not created any new errors. 

  • Run Checks After Every Step: Each time your perform a single task of data cleaning or data wrangling, always run checks afterwards to verify that the data behaves as expected (e.g., no unexpected missing values or duplicates).
  • Use Summary Statistics: Calculate the mean, median, counts, and any other relevant summary statistics before and after cleaning to ensure that your data has not been unintentionally altered.

4. Automate Where Possible

Automation can save significant time and reduce the likelihood of errors, especially when dealing with large datasets or repetitive tasks. Many tools offer ways to automate data cleaning and wrangling processes.

  • Use Scripts: Use Excel's macro feature to automate common tasks. Google Sheets users can utilize Google Apps Script for similar automation. In Python and R, write scripts to automate repetitive tasks like data cleaning, merging, and transforming datasets.
  • Templates: Create reusable templates in Excel or Google Sheets for common data cleaning workflows.

5. Handle Missing Data with Care

Handling missing data requires thoughtful consideration, as different approaches can lead to different analytical outcomes. Make sure you understand the implications of each method before applying it.

  • Consider the Impact: Think about how the method you choose to handle missing data (e.g., deletion, imputation) might affect your analysis and results.
  • Imputation Strategies: If imputing missing data, consider using more sophisticated methods like regression or multiple imputation, especially in large datasets.

6. Be Cautious with Data Transformation

While transforming data is often necessary, it is important to proceed with caution. Ensure that transformations are appropriate and maintain the integrity of the original data.

  • Avoid Overfitting: When transforming variables, avoid making changes that fit your data too closely to a specific model, as this can lead to overfitting.
  • Keep the Original Data: Always keep a copy of the original data before performing transformations, so you can revert if needed.

7. Use Visualizations for Quality Checks

Visualizing your data during the cleaning and wrangling process can help you quickly identify issues like outliers, incorrect data types, or unexpected patterns.

  • Use Plots for Inspection: Create scatter plots, box plots, or histograms to visually inspect data quality at various stages of the cleaning process.
  • Highlight Issues: Use color-coding or conditional formatting in Excel and Google Sheets to highlight potential issues that need further investigation.

Refer to our Data Visualization guide for more information.

8. Collaborate Effectively

When working in teams, effective collaboration is key to successful data cleaning and wrangling. Make sure that everyone involved understands the process and follows the same best practices.

  • Shared Documentation: Maintain a shared document or repository where all team members can access the cleaning and wrangling process documentation.
  • Version Control: Use version control systems like Git when working with code, or keep multiple versions of your datasets in shared folders to track changes.

9. Always Validate the Final Dataset

Before moving on to analysis, perform a final validation of your cleaned and wrangled dataset. This final check ensures that all issues have been addressed and the data is ready for reliable analysis.

  • Recheck Summary Statistics: Compare summary statistics (e.g., means, totals) with the original dataset to ensure consistency.
  • Cross-Check with Raw Data: If possible, cross-check your final dataset with the raw data to ensure that no important information was lost or incorrectly modified.