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Biomedical Informatics
Biomedical Informatics Resource Guide
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Bibliographic Sources
e-Journals
Associations
Funding Sources
Semantics/Ontologies
Semantic Knowledge Representations/NLP
Semantic Web Resources & Cataloging
Terminologies
Ontologies
Disaster Informatics
Imaging/Path
Data Management
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Bioinformatics
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Semantic Knowledge Representations/NLP
Semantic Knowledge Representation Project
From the Cognitive Science Branch of the Lister Hill National Center for Biomedical Communications.
SemRep Software
Semantic MEDLINE
Must request access to use this tool as it requires a free license for UMLS.
SemMed Database
Contains the ~80 millions predications drawn from PubMed via SemRep. Requires an account to access.
Zeeva: A Collaborative Semantic Literature Management System
Tools & Resources from Semantic Software Lab, Concordia University
Software from the Stanford NLP Group
Natural Language Processing APIs from Mashape
Semantic Web Resources & Cataloging
Semantic Web W3C
Schema.Org
Schema Bib Extend Community Group (W3C)
BibFlow Project
Common Ground: Exploring Compatibilities Between the Linked Data Models of the Library of Congress and OCLC
BibFrame -- Library of Congress
OCLC - Data Strategy and Linked Data
Terminologies
ICD-9-CM (2009)
ICD-9-CM at eicd.com
National Drug Code Directory (FDA)
NCI Term Browser
Access, browse and search multiple terminology sets including both NCI Thesaurus (NCIt) and the NCI Metathesaurus (NCIm).
LOINC: Logical Observation Identifier Names and Codes
A universal code system for tests, measurements, and observations.
Medical Subject Headings (MeSH) - National Library of Medicine
Unified Medical Language System® (UMLS®)
Requires an application for a license and login, but it's free and quick.
MedDRA: Medical Dictionary for Regulatory Activities Terminology
Free to academics and healthcare providers; accessible through the NCI Term Browser.
Ontologies
BioPortal
A searchable and browsable respository of biomedical ontologies.
The Open Biologival and Biomedical Ontologies (OBO Foundry)
Gene Ontology Consortium
Unified Medical Language System (UMLS)
EMBL-EBI Ontologies
Links to a variety of biological ontologies from EMBL-EBI.
Human Phenotype Ontology
HPE provides a standardized vocabulary of phenotypic abnormalities encountered in human disease.
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