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Stony Brook University

Bioinformatics, Genetics and Computational Biology

Databases and resources focused on molecular biology, genetics, genomes, and related biological data.

Protein Structures

Protein Data Bank
Molecular Modeling Database (MMDB)
NCBI's molecular structure database
PPT-DB: Protein Property Prediction and Testing Database
TOPdb: Topology Databank of Transmembrane Proteins
Phospho3D
Three-dimensional structures of protein phosphorylation sites
Proteopedia
WebCSD
Online portal to the Cambridge Structural Database

Molecular Graphics Programs

Molecular Graphics Software Links from PDB
Links to a variety of structure viewing programs.
Cn3D
Free molecular structure viewer from the NCBI.
Jmol
Open-source Java viewer
RasMol
Free Molecular Graphics Visualisation Tool
SBU DoIT's Software Catalog
A wide range of software available at SBU SINC sites or through the SBU Virtual SINC.

Nucleic Acid Structures

The Nucleic Acid Database Project from Rutgers
Three-dimensional Structural Information about Nucleic Acids